PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01009477001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family HSF
Protein Properties Length: 282aa    MW: 31829.2 Da    PI: 8.5903
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01009477001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.82.8e-36251172103
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        Fl+k+y++++d+++++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ Fkkg+k+l
  GSVIVT01009477001  25 FLTKTYQLVDDPATDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFKKGEKHL 107
                        9*****************************************************************99.........*************** PP

                        XXXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkkse 103
                        l++i+r+k++
  GSVIVT01009477001 108 LCEIHRRKTS 117
                        *******987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.1E-3817109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.5E-6121114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.9E-3522114IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.0E-202548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.5E-3225114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.0E-206375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.0E-207688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MALMLDNCEG ILLSLDSHKS VPAPFLTKTY QLVDDPATDH IVSWGEDDTT FVVWRPPEFA  60
RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANEFF KKGEKHLLCE IHRRKTSQPQ  120
VPMNHHHHHH SPLGDNERLR RSNSILMSEL AHMRKLYNDI IYFVQNHVKP VAPSNSYPSS  180
LVICNPPSSA TTAAATITCS STAMVQKPLN HTTTSSKSSL TVLEETNGSS CRTKLFGVPL  240
QSKKRLHPEY ASTTTSMETN KARLVLDKDD LGLNLMPPSP C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-222011716123Heat shock factor protein 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4313201e-137AM431320.2 Vitis vinifera contig VV78X139241.9, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083880.11e-152PREDICTED: heat stress transcription factor B-4-like
SwissprotQ9C6351e-109HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLU5FNH41e-149U5FNH4_POPTR; Uncharacterized protein
STRINGSolyc04g078770.2.11e-122(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-102heat shock transcription factor B4