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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01009477001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | HSF | ||||||||
Protein Properties | Length: 282aa MW: 31829.2 Da PI: 8.5903 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 115.8 | 2.8e-36 | 25 | 117 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 Fl+k+y++++d+++++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+ ++ weF+++ Fkkg+k+l GSVIVT01009477001 25 FLTKTYQLVDDPATDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFKKGEKHL 107 9*****************************************************************99.........*************** PP XXXXXXXXXX CS HSF_DNA-bind 94 lekikrkkse 103 l++i+r+k++ GSVIVT01009477001 108 LCEIHRRKTS 117 *******987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.1E-38 | 17 | 109 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 7.5E-61 | 21 | 114 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 5.9E-35 | 22 | 114 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 4.0E-20 | 25 | 48 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 4.5E-32 | 25 | 114 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.0E-20 | 63 | 75 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 64 | 88 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.0E-20 | 76 | 88 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008356 | Biological Process | asymmetric cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MALMLDNCEG ILLSLDSHKS VPAPFLTKTY QLVDDPATDH IVSWGEDDTT FVVWRPPEFA 60 RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANEFF KKGEKHLLCE IHRRKTSQPQ 120 VPMNHHHHHH SPLGDNERLR RSNSILMSEL AHMRKLYNDI IYFVQNHVKP VAPSNSYPSS 180 LVICNPPSSA TTAAATITCS STAMVQKPLN HTTTSSKSSL TVLEETNGSS CRTKLFGVPL 240 QSKKRLHPEY ASTTTSMETN KARLVLDKDD LGLNLMPPSP C* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 1e-22 | 20 | 117 | 16 | 123 | Heat shock factor protein 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00187 | DAP | Transfer from AT1G46264 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM431320 | 1e-137 | AM431320.2 Vitis vinifera contig VV78X139241.9, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011083880.1 | 1e-152 | PREDICTED: heat stress transcription factor B-4-like | ||||
Swissprot | Q9C635 | 1e-109 | HSFB4_ARATH; Heat stress transcription factor B-4 | ||||
TrEMBL | U5FNH4 | 1e-149 | U5FNH4_POPTR; Uncharacterized protein | ||||
STRING | Solyc04g078770.2.1 | 1e-122 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP96 | 17 | 233 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46264.1 | 1e-102 | heat shock transcription factor B4 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01009477001 |